Bulk Data

As published in Teo et al on hg18

  • Genotypes : Individual genotype data to date.
  • Frequencies :  Allele & genotype frequencies compiled from genotyping data to date.
  • LD Data :  Linkage disequilibrium properties D’, LOD , R2 compiled from the genotype data to date
  • Pharmacogenomic variants :  Genotype data for 3972 SNPs involved in drug disposition and response in 253 SGVP individuals
  • Phasing Data :  Phasing data generated using the PHASE software, compiled from the genotype data to date.
  • Recombination Rates :  Recombination rates and genetic distances, compiled from the genotype data to date.
  • Selection :  iHS score, compiled from the genotype data to date.
  • varLD :  Genome-wide varLD scores for 17 population pairs.
  • Copy Number Variation :  Copy Number Variation loci identified in SGVP.
  • Genotypes :  Individual genotypes in Plink and VCF on hg19.
  • HLA Data

  •      HLA genotypes/phased haplotypes : Imputation Reference panel for the Human Leukocyte Antigen (HLA) in the Major Histocompatibility Complex (MHC) region of Chromosome 6 in the three South-East Asian populations of Singapore Chinese, Malays and Indians.