Research Publications

38. Viscous field-aligned water exhibits cubic-ice-like structural motifs.

37. How Cubic Can Ice Be?

Amaya AJ, Pathak H, Modak VP, Laksmono H, Loh ND, Sellberg JA, et al.

 J Phys Chem Lett. 2017;8: 3216–3222.

36. Flow-aligned, single-shot fiber diffraction using a femtosecond X-ray free-electron laser.

Popp D, Loh ND, Zorgati H, Ghoshdastider U, Liow LT, Ivanova MI, et al.

Cytoskeleton. 2017. doi:10.1002/cm.21378

35. Experimental strategies for imaging bioparticles with femtosecond hard X-ray pulses.

Daurer BJ, Okamoto K, Bielecki J, Maia FRNC, Mühlig K, Seibert MM, et al.

IUCrJ. 2017;4. doi:10.1107/S2052252517003591

34. SIMEX: Simulation of Experiments at Advanced Light Sources.

Fortmann-Grote C, Andreev AA, Briggs R, Bussmann M, Buzmakov A, Garten M, et al.

IUCrJ. 2017;4: 560–568.

1. Multi-step nucleation of nanocrystals in aqueous solution

   N. Duane Loh, Soumyo Sen, Michael Bosman, Shu Fen Tan, Jun Zhong, Christian A Nijhuis, Petr Kral, Paul Matsudaira, Utkur Mirsaidov.

   Nature Chemistry 9, 77-82, 2017

2. Desorption-Mediated Motion of Nanoparticles at the Liquid-Solid Interface

   SW Chee, Z Baraissov, ND Loh, PT Matsudaira, U Mirsaidov

   The Journal of Physical Chemistry C, 2016

3. CCP-FEL: a collection of computer programs for free-electron laser research

   FRNC Maia, TA White, ND Loh, J Hajdu

   Journal of Applied Crystallography 49 (4), 1117-1120, 2016

4. Dragonfly: an implementation of the expand–maximize–compress algorithm for single-particle imaging

   K Ayyer, TY Lan, V Elser, ND Loh

   Journal of Applied Crystallography 49 (4), 2016

5. Single-shot diffraction data from the mimivirus particle using an X-ray free-electron laser

   Tomas Ekeberg, Martin Svenda, M Marvin Seibert, Chantal Abergel, Filipe RNC Maia, Virginie Seltzer, Daniel P DePonte, Andrew Aquila, Jakob Andreasson, Bianca Iwan, Olof Jönsson, Daniel Westphal, Duško Odić, Inger Andersson, Anton Barty, Meng Liang, Andrew V Martin, Lars Gumprecht, Holger Fleckenstein, Saša Bajt, Miriam Barthelmess, Nicola Coppola, Jean-Michel Claverie, N Duane Loh, Christoph Bostedt, John D Bozek, Jacek Krzywinski, Marc Messerschmidt, Michael J Bogan, Christina Y Hampton, Raymond G Sierra, Matthias Frank, Robert L Shoeman, Lukas Lomb, Lutz Foucar, Sascha W Epp, Daniel Rolles, Artem Rudenko, Robert Hartmann, Andreas Hartmann, Nils Kimmel, Peter Holl, Georg Weidenspointner, Benedikt Rudek, Benjamin Erk, Stephan Kassemeyer, Ilme Schlichting, Lothar Strüder, Joachim Ullrich, Carlo Schmidt, Faton Krasniqi, Günter Hauser, Christian Reich, Heike Soltau, Sebastian Schorb, Helmut Hirsemann, Cornelia Wunderer, Heinz Graafsma, Henry Chapman, Janos Hajdu.

   Scientific Data 3, 2016

6. Open data set of live cyanobacterial cells imaged using an X-ray laser

   Gijs Van Der Schot, Martin Svenda, Filipe RNC Maia, Max F Hantke, Daniel P DePonte, M Marvin Seibert, Andrew Aquila, Joachim Schulz, Richard A Kirian, Mengning Liang, Francesco Stellato, Sadia Bari, Bianca Iwan, Jakob Andreasson, Nicusor Timneanu, Johan Bielecki, Daniel Westphal, Francisca Nunes De Almeida, Duško Odić, Dirk Hasse, Gunilla H Carlsson, Daniel SD Larsson, Anton Barty, Andrew V Martin, Sebastian Schorb, Christoph Bostedt, John D Bozek, Sebastian Carron, Ken Ferguson, Daniel Rolles, Artem Rudenko, Sascha W Epp, Lutz Foucar, Benedikt Rudek, Benjamin Erk, Robert Hartmann, Nils Kimmel, Peter Holl, Lars Englert, N Duane Loh, Henry N Chapman, Inger Andersson, Janos Hajdu, Tomas Ekeberg.

   Scientific Data 3, 2016

7. A data set from flash X-ray imaging of carboxysomes

   Max F Hantke, Dirk Hasse, Tomas Ekeberg, Katja John, Martin Svenda, Duane Loh, Andrew V Martin, Nicusor Timneanu, Daniel SD Larsson, Gijs Van Der Schot, Gunilla H Carlsson, Margareta Ingelman, Jakob Andreasson, Daniel Westphal, Bianca Iwan, Charlotte Uetrecht, Johan Bielecki, Mengning Liang, Francesco Stellato, Daniel P DePonte, Sadia Bari, Robert Hartmann, Nils Kimmel, Richard A Kirian, M Marvin Seibert, Kerstin Mühlig, Sebastian Schorb, Ken Ferguson, Christoph Bostedt, Sebastian Carron, John D Bozek, Daniel Rolles, Artem Rudenko, Lutz Foucar, Sascha W Epp, Henry N Chapman, Anton Barty, Inger Andersson, Janos Hajdu, Filipe RNC Maia.

   Scientific Data 3, 2016

8. A comprehensive simulation framework for imaging single particles and biomolecules at the European X-ray Free-Electron Laser

   Chun Hong Yoon, Mikhail V Yurkov, Evgeny A Schneidmiller, Liubov Samoylova, Alexey Buzmakov, Zoltan Jurek, Beata Ziaja, Robin Santra, N Duane Loh, Thomas Tschentscher, Adrian P Mancuso.

   Scientific reports 6, 2016

9. Hydration Layer-mediated Pairwise Interaction of Nanoparticles

   U Anand, J Lu, ND Loh, Z Aabdin, U Mirsaidov

   Nano letters 16 (1), 786-790, 2016

10. Anomalous behavior of the homogeneous ice nucleation rate in “no-man’s land”

    Hartawan Laksmono, Trevor A McQueen, Jonas A Sellberg, N Duane Loh, Congcong Huang, Daniel Schlesinger, Raymond G Sierra, Christina Y Hampton, Dennis Nordlund, Martin Beye, Andrew V Martin, Anton Barty, M Marvin Seibert, Marc Messerschmidt, Garth J Williams, Sébastien Boutet, Katrin Amann-Winkel, Thomas Loerting, Lars GM Pettersson, Michael J Bogan, Anders Nilsson.

    The journal of physical chemistry letters 6 (14), 2826-2832, 2015

11. Three-dimensional reconstruction of the giant mimivirus particle with an x-ray free-electron laser

    Tomas Ekeberg, Martin Svenda, Chantal Abergel, Filipe RNC Maia, Virginie Seltzer, Jean-Michel Claverie, Max Hantke, Olof Jönsson, Carl Nettelblad, Gijs Van Der Schot, Mengning Liang, Daniel P DePonte, Anton Barty, M Marvin Seibert, Bianca Iwan, Inger Andersson, N Duane Loh, Andrew V Martin, Henry Chapman, Christoph Bostedt, John D Bozek, Ken R Ferguson, Jacek Krzywinski, Sascha W Epp, Daniel Rolles, Artem Rudenko, Robert Hartmann, Nils Kimmel, Janos Hajdu.

    Physical review letters 114 (9), 098102, 2015

12. Imaging single cells in a beam of live cyanobacteria with an x-ray laser

    Gijs Van Der Schot, Martin Svenda, Filipe RNC Maia, Max Hantke, Daniel P DePonte, M Marvin Seibert, Andrew Aquila, Joachim Schulz, Richard Kirian, Mengning Liang, Francesco Stellato, Bianca Iwan, Jakob Andreasson, Nicusor Timneanu, Daniel Westphal, F Nunes Almeida, Dusko Odic, Dirk Hasse, Gunilla H Carlsson, Daniel SD Larsson, Anton Barty, Andrew V Martin, Sebastian Schorb, Christoph Bostedt, John D Bozek, Daniel Rolles, Artem Rudenko, Sascha Epp, Lutz Foucar, Benedikt Rudek, Robert Hartmann, Nils Kimmel, Peter Holl, Lars Englert, Ne-Te Duane Loh, Henry N Chapman, Inger Andersson, Janos Hajdu, Tomas Ekeberg.

    Nature communications 6, 2015

13. High-throughput imaging of heterogeneous cell organelles with an X-ray laser

    Max F Hantke, Dirk Hasse, Filipe RNC Maia, Tomas Ekeberg, Katja John, Martin Svenda, N Duane Loh, Andrew V Martin, Nicusor Timneanu, Daniel SD Larsson, Gijs Van Der Schot, Gunilla H Carlsson, Margareta Ingelman, Jakob Andreasson, Daniel Westphal, Mengning Liang, Francesco Stellato, Daniel P DePonte, Robert Hartmann, Nils Kimmel, Richard A Kirian, M Marvin Seibert, Kerstin Mühlig, Sebastian Schorb, Ken Ferguson, Christoph Bostedt, Sebastian Carron, John D Bozek, Daniel Rolles, Artem Rudenko, Sascha Epp, Henry N Chapman, Anton Barty, Janos Hajdu, Inger Andersson.

    Nature photonics 8 (12), 943-949, 2014

14. Bonding pathways of gold nanocrystals in solution

    Z Aabdin, J Lu, X Zhu, U Anand, ND Loh, H Su, U Mirsaidov

    Nano letters 14 (11), 6639-6643, 2014

15. Ultrafast X-ray probing of water structure below the homogeneous ice nucleation temperature

    Jonas A Sellberg, C Huang, TA McQueen, ND Loh, H Laksmono, Daniel Schlesinger, RG Sierra, D Nordlund, CY Hampton, D Starodub, DP DePonte, M Beye, C Chen, AV Martin, A Barty, Kjartan Thor Wikfeldt, TM Weiss, C Caronna, J Feldkamp, LB Skinner, MM Seibert, M Messerschmidt, GJ Williams, S Boutet, Lars GM Pettersson, MJ Bogan, Anders Nilsson

    Nature 510 (7505), 381-384, 2014

16. Nanoparticle dynamics in a nanodroplet

    J Lu, Z Aabdin, ND Loh, D Bhattacharya, U Mirsaidov

    Nano letters 14 (4), 2111-2115, 2014

17. A minimal view of single-particle imaging with X-ray lasers.

    ND Loh

    Philos. Trans. R. Soc. B Biol. Sci. 369, 20130328, 2014

18. Toward unsupervised single-shot diffractive imaging of heterogeneous particles using X-ray free-electron lasers

    Hyung Joo Park, N Duane Loh, Raymond G Sierra, Christina Y Hampton, Dmitri Starodub, Andrew V Martin, Anton Barty, Andrew Aquila, Joachim Schulz, Jan Steinbrener, Robert L Shoeman, Lukas Lomb, Stephan Kassemeyer, Christoph Bostedt, John Bozek, Sascha W Epp, Benjamin Erk, Robert Hartmann, Daniel Rolles, Artem Rudenko, Benedikt Rudek, Lutz Foucar, Nils Kimmel, Georg Weidenspointner, Guenter Hauser, Peter Holl, Emanuele Pedersoli, Mengning Liang, Mark S Hunter, Lars Gumprecht, Nicola Coppola, Cornelia Wunderer, Heinz Graafsma, Filipe RNC Maia, Tomas Ekeberg, Max Hantke, Holger Fleckenstein, Helmut Hirsemann, Karol Nass, Herbert J Tobias, George R Farquar, W Henry Benner, Stefan Hau-Riege, Christian Reich, Andreas Hartmann, Heike Soltau, Stefano Marchesini, Sasa Bajt, Miriam Barthelmess, Lothar Strueder, Joachim Ullrich, Philip Bucksbaum, Matthias Frank, Ilme Schlichting, Henry N Chapman, Michael J Bogan, Veit Elser.

    Optics express 21 (23), 28729-28742, 2013

19. Mesoscale morphology of airborne core–shell nanoparticle clusters: x-ray laser coherent diffraction imaging

    E Pedersoli, ND Loh, F Capotondi, CY Hampton, RG Sierra, D Starodub, C Bostedt, J Bozek, AJ Nelson, M Aslam, S Li, VP Dravid, AV Martin, A Aquila, A Barty, H Fleckenstein, L Gumprecht, M Liang, Karol Nass, J Schulz, TA White, N Coppola, S Bajt, M Barthelmess, H Graafsma, H Hirsemann, C Wunderer, SW Epp, Benjamin Erk, Benedikt Rudek, A Rudenko, Lutz Foucar, Stefan Kassemeyer, Lukas Lomb, Daniel Rolles, Robert L Shoeman, J Steinbrener, R Hartmann, A Hartmann, G Hauser, P Holl, N Kimmel, C Reich, H Soltau, G Weidenspointner, WH Benner, GR Farquar, SP Hau-Riege, MS Hunter, Tomas Ekeberg, Max Hantke, Filipe RNC Maia, HJ Tobias, S Marchesini, M Frank, L Strüder, Ilme Schlichting, J Ullrich, HN Chapman, PH Bucksbaum, M Kiskinova, MJ Bogan.

    Journal of Physics B: Atomic, Molecular and Optical Physics 46 (16), 164033, 2013

20. The extraction of single-particle diffraction patterns from a multiple-particle diffraction pattern

    AV Martin, AJ Morgan, Tomas Ekeberg, ND Loh, Filipe RNC Maia, F Wang, JCH Spence, HN Chapman.

    Optics express 21 (13), 15102-15112, 2013

21. Sensing the wavefront of X-ray free-electron lasers using aerosol spheres

    N Duane Loh, Dmitri Starodub, Lukas Lomb, Christina Y Hampton, Andrew V Martin, Raymond G Sierra, Anton Barty, Andrew Aquila, Joachim Schulz, Jan Steinbrener, Robert L Shoeman, Stephan Kassemeyer, Christoph Bostedt, John Bozek, Sascha W Epp, Benjamin Erk, Robert Hartmann, Daniel Rolles, Artem Rudenko, Benedikt Rudek, Lutz Foucar, Nils Kimmel, Georg Weidenspointner, Guenter Hauser, Peter Holl, Emanuele Pedersoli, Mengning Liang, Mark S Hunter, Lars Gumprecht, Nicola Coppola, Cornelia Wunderer, Heinz Graafsma, Filipe RNC Maia, Tomas Ekeberg, Max Hantke, Holger Fleckenstein, Helmut Hirsemann, Karol Nass, Thomas A White, Herbert J Tobias, George R Farquar, W Henry Benner, Stefan Hau-Riege, Christian Reich, Andreas Hartmann, Heike Soltau, Stefano Marchesini, Sasa Bajt, Miriam Barthelmess, Lothar Strueder, Joachim Ullrich, Philip Bucksbaum, Matthias Frank, Ilme Schlichting, Henry N Chapman, Michael J Bogan.

    Optics express 21 (10), 12385-12394, 2013

22. X-ray Free-Electron Lasers: Illuminating a New Path to Single Particle Imaging

    AV Martin, NTD Loh

    Synchrotron Radiation News 26 (2), 11-19, 2013

23. Single-particle structure determination by correlations of snapshot X-ray diffraction patterns

    Dmitri Starodub, Andrew Aquila, Saša Bajt, Miriam Barthelmess, Anton Barty, Christoph Bostedt, John D Bozek, Nicola Coppola, R Bruce Doak, Sascha W Epp, Benjamin Erk, Lutz Foucar, Lars Gumprecht, Christina Y Hampton, Andreas Hartmann, Robert Hartmann, Peter Holl, Stephan Kassemeyer, Nils Kimmel, Hartawan Laksmono, Mengning Liang, ND Loh, Lukas Lomb, Andrew V Martin, Karol Nass, Christian Reich, Daniel Rolles, Benedikt Rudek, Artem Rudenko, Joachim Schulz, Robert L Shoeman, Raymond G Sierra, Heike Soltau, Jan Steinbrener, Francesco Stellato, Stephan Stern, Georg Weidenspointner, Matthias Frank, Joachim Ullrich, Lothar Strüder, Ilme Schlichting, Henry N Chapman, John CH Spence, Michael J Bogan.

    Nature communications 3, 1276, 2012

24. Nanoflow electrospinning serial femtosecond crystallography

    Raymond G Sierra, Hartawan Laksmono, Jan Kern, Rosalie Tran, Johan Hattne, Roberto Alonso-Mori, Benedikt Lassalle-Kaiser, Carina Glöckner, Julia Hellmich, Donald W Schafer, Nathaniel Echols, Richard J Gildea, Ralf W Grosse-Kunstleve, Jonas Sellberg, Trevor A McQueen, Alan R Fry, Marc M Messerschmidt, Alan Miahnahri, M Marvin Seibert, Christina Y Hampton, Dmitri Starodub, N Duane Loh, Dimosthenis Sokaras, T-C Weng, Petrus H Zwart, Pieter Glatzel, Despina Milathianaki, William E White, Paul D Adams, Garth J Williams, Sébastien Boutet, Athina Zouni, Johannes Messinger, Nicholas K Sauter, Uwe Bergmann, Junko Yano, Vittal K Yachandra, Michael J Bogan

    Acta Crystallographica Section D: Biological Crystallography 68 (11), 1584-1587, 2012

25. Effects of extraneous noise in cryptotomography

    ND Loh

    SPIE Optical Engineering+ Applications, 85000K-85000K-15, 2012

26. Profiling structured beams using injected aerosols

    ND Loh, D Starodub, L Lomb, CY Hampton, AV Martin, RG Sierra, A Barty, …

    SPIE Optical Engineering+ Applications, 850403-850403-10, 2012

27. Noise-robust coherent diffractive imaging with a single diffraction pattern

    Andrew V Martin, Fenglin Wang, ND Loh, Tomas Ekeberg, Filipe RNC Maia, Max Hantke, Gijs van der Schot, Christina Y Hampton, Raymond G Sierra, Andrew Aquila, Saša Bajt, Miriam Barthelmess, Christoph Bostedt, John D Bozek, Nicola Coppola, Sascha W Epp, Benjamin Erk, Holger Fleckenstein, Lutz Foucar, Matthias Frank, Heinz Graafsma, Lars Gumprecht, Andreas Hartmann, Robert Hartmann, Gunter Hauser, Helmut Hirsemann, Peter Holl, Stephan Kassemeyer, Nils Kimmel, Mengning Liang, Lukas Lomb, Stefano Marchesini, Karol Nass, Emanuele Pedersoli, Christian Reich, Daniel Rolles, Benedikt Rudek, Artem Rudenko, Joachim Schulz, Robert L Shoeman, Heike Soltau, Dmitri Starodub, Jan Steinbrener, Francesco Stellato, Lothar Strüder, Joachim Ullrich, Georg Weidenspointner, Thomas A White, Cornelia B Wunderer, Anton Barty, Ilme Schlichting, Michael J Bogan, Henry N Chapman.

    Optics Express 20 (15), 16650-16661, 2012

28. Fractal morphology, imaging and mass spectrometry of single aerosol particles in flight

    ND Loh, Christina Y Hampton, Andrew V Martin, Dmitri Starodub, Raymond G Sierra, Anton Barty, Andrew Aquila, Joachim Schulz, Lukas Lomb, Jan Steinbrener, Robert L Shoeman, Stephan Kassemeyer, Christoph Bostedt, John Bozek, Sascha W Epp, Benjamin Erk, Robert Hartmann, Daniel Rolles, Artem Rudenko, Benedikt Rudek, Lutz Foucar, Nils Kimmel, Georg Weidenspointner, Gunter Hauser, Peter Holl, Emanuele Pedersoli, Mengning Liang, Mark S Hunter, Lars Gumprecht, Nicola Coppola, C Wunderer, Heinz Graafsma, Filipe RNC Maia, Tomas Ekeberg, Max Hantke, Holger Fleckenstein, Helmut Hirsemann, Karol Nass, Thomas A White, HJ Tobias, George R Farquar, W Henry Benner, SP Hau-Riege, C Reich, A Hartmann, H Soltau, S Marchesini, Saša Bajt, M Barthelmess, P Bucksbaum, KO Hodgson, L Strüder, J Ullrich, M Frank, I Schlichting, Henry N Chapman, MJ Bogan.

    Nature 486 (7404), 513-517, 2012

29. Femtosecond dark-field imaging with an X-ray free electron laser

    Andrew V Martin, ND Loh, Christina Y Hampton, Raymond G Sierra, Fenglin Wang, Andrew Aquila, Saša Bajt, Miriam Barthelmess, Christoph Bostedt, John D Bozek, Nicola Coppola, Sascha W Epp, Benjamin Erk, Holger Fleckenstein, Lutz Foucar, Matthias Frank, Heinz Graafsma, Lars Gumprecht, Andreas Hartmann, Robert Hartmann, Gunter Hauser, Helmut Hirsemann, Peter Holl, Stephan Kassemeyer, Nils Kimmel, Mengning Liang, Lukas Lomb, Filipe RNC Maia, Stefano Marchesini, Karol Nass, Emanuele Pedersoli, Christian Reich, Daniel Rolles, Benedikt Rudek, Artem Rudenko, Joachim Schulz, Robert L Shoeman, Heike Soltau, Dmitri Starodub, Jan Steinbrener, Francesco Stellato, Lothar Strüder, Joachim Ullrich, Georg Weidenspointner, Thomas A White, Cornelia B Wunderer, Anton Barty, Ilme Schlichting, Michael J Bogan, Henry N Chapman.

    Optics express 20 (12), 13501-13512, 2012

30. Unsupervised classification of single-particle X-ray diffraction snapshots by spectral clustering

    Chun Hong Yoon, Peter Schwander, Chantal Abergel, Inger Andersson, Jakob Andreasson, Andrew Aquila, Saša Bajt, Miriam Barthelmess, Anton Barty, Michael J Bogan, Christoph Bostedt, John Bozek, Henry N Chapman, Jean-Michel Claverie, Nicola Coppola, Daniel P DePonte, Tomas Ekeberg, Sascha W Epp, Benjamin Erk, Holger Fleckenstein, Lutz Foucar, Heinz Graafsma, Lars Gumprecht, Janos Hajdu, Christina Y Hampton, Andreas Hartmann, Elisabeth Hartmann, Robert Hartmann, Gunter Hauser, Helmut Hirsemann, Peter Holl, Stephan Kassemeyer, Nils Kimmel, Maya Kiskinova, Mengning Liang, Ne-Te Duane Loh, Lukas Lomb, Filipe RNC Maia, Andrew V Martin, Karol Nass, Emanuele Pedersoli, Christian Reich, Daniel Rolles, Benedikt Rudek, Artem Rudenko, Ilme Schlichting, Joachim Schulz, Marvin Seibert, Virginie Seltzer, Robert L Shoeman, Raymond G Sierra, Heike Soltau, Dmitri Starodub, Jan Steinbrener, Gunter Stier, Lothar Strüder, Martin Svenda, Joachim Ullrich, Georg Weidenspointner, Thomas A White, Cornelia Wunderer, Abbas Ourmazd.

    Optics express 19 (17), 16542-16549, 2011

31. Recovering magnetization distributions from their noisy diffraction data

    ND Loh, S Eisebitt, S Flewett, V Elser

    Physical Review E 82 (6), 061128, 2010

32. Cryptotomography: reconstructing 3D Fourier intensities from randomly oriented single-shot diffraction patterns

    ND Loh, MJ Bogan, Veit Elser, Anton Barty, Sébastien Boutet, Saša Bajt, Janos Hajdu, Tomas Ekeberg, Filipe RNC Maia, J Schulz, Marvin Marvin Seibert, Bianca Iwan, Nicusor Timneanu, S Marchesini, I Schlichting, Robert L Shoeman, L Lomb, M Frank, M Liang, Henry N Chapman.

    Physical review letters 104 (22), 225501, 2010

33. Reconstruction algorithm for single-particle diffraction imaging experiments

    ND Loh, V Elser

    Physical Review E 80 (2), 026705, 2009